Index

Symbols

--author rdfsolve-pipeline-local-mine command line option rdfsolve-pipeline-mine command line option --base-port rdfsolve-pipeline-qleverfile command line option --benchmark rdfsolve-pipeline-local-mine command line option rdfsolve-pipeline-mine command line option rdfsolve-pipeline-qleverfile command line option --chain-cutoff rdfsolve-inference-run command line option rdfsolve-inference-seed command line option --chunk-size rdfsolve-pipeline-local-mine command line option rdfsolve-pipeline-mine command line option --class-batch-size rdfsolve-pipeline-local-mine command line option rdfsolve-pipeline-mine command line option --class-chunk-size rdfsolve-pipeline-local-mine command line option rdfsolve-pipeline-mine command line option --closed rdfsolve-export-shacl command line option --data-dir rdfsolve-pipeline-qleverfile command line option --dataset rdfsolve-instance-match-probe command line option rdfsolve-instance-match-seed command line option --discover-first rdfsolve-pipeline-local-mine command line option --endpoint rdfsolve-pipeline-local-mine command line option --endpoint-name rdfsolve-export-rdfconfig command line option --endpoint-url rdfsolve-export-jsonld command line option rdfsolve-export-rdfconfig command line option --filter rdfsolve-pipeline-local-mine command line option rdfsolve-pipeline-mine command line option rdfsolve-pipeline-qleverfile command line option --format rdfsolve-pipeline-local-mine command line option rdfsolve-pipeline-mine command line option rdfsolve-pipeline-qleverfile command line option --generalisation rdfsolve-inference-run command line option rdfsolve-inference-seed command line option --graph-uri rdfsolve-export-jsonld command line option rdfsolve-export-rdfconfig command line option --input rdfsolve-inference-run command line option --input-dir rdfsolve-inference-seed command line option --name rdfsolve-inference-run command line option rdfsolve-inference-seed command line option rdfsolve-pipeline-local-mine command line option --no-counts rdfsolve-pipeline-local-mine command line option rdfsolve-pipeline-mine command line option --no-inversion rdfsolve-inference-run command line option rdfsolve-inference-seed command line option --no-skip-existing rdfsolve-instance-match-seed command line option --no-transitivity rdfsolve-inference-run command line option rdfsolve-inference-seed command line option --one-shot rdfsolve-pipeline-local-mine command line option rdfsolve-pipeline-mine command line option --open rdfsolve-export-shacl command line option --output rdfsolve-inference-run command line option rdfsolve-instance-match-probe command line option --output-dir rdfsolve-export-csv command line option rdfsolve-export-jsonld command line option rdfsolve-export-linkml command line option rdfsolve-export-rdfconfig command line option rdfsolve-export-shacl command line option rdfsolve-export-void command line option rdfsolve-inference-seed command line option rdfsolve-instance-match-seed command line option rdfsolve-pipeline-local-mine command line option rdfsolve-pipeline-mine command line option rdfsolve-pipeline-qleverfile command line option rdfsolve-semra-import command line option rdfsolve-semra-seed command line option

--predicate rdfsolve-instance-match-probe command line option rdfsolve-instance-match-seed command line option --prefix rdfsolve-instance-match-probe command line option rdfsolve-semra-import command line option rdfsolve-semra-seed command line option --prefixes rdfsolve-instance-match-seed command line option --runtime rdfsolve-pipeline-qleverfile command line option --schema-description rdfsolve-export-linkml command line option rdfsolve-export-shacl command line option --schema-name rdfsolve-export-linkml command line option rdfsolve-export-shacl command line option --schema-uri rdfsolve-export-linkml command line option rdfsolve-export-shacl command line option --source rdfsolve-semra-import command line option --sources rdfsolve-instance-match-probe command line option rdfsolve-instance-match-seed command line option rdfsolve-pipeline-local-mine command line option rdfsolve-pipeline-mine command line option rdfsolve-pipeline-qleverfile command line option rdfsolve-semra-seed command line option --suffix rdfsolve-export-shacl command line option --test rdfsolve-pipeline-local-mine command line option rdfsolve-pipeline-qleverfile command line option --timeout rdfsolve-instance-match-probe command line option rdfsolve-instance-match-seed command line option rdfsolve-pipeline-local-mine command line option rdfsolve-pipeline-mine command line option rdfsolve-pipeline-qleverfile command line option --untyped-as-classes rdfsolve-pipeline-local-mine command line option rdfsolve-pipeline-mine command line option --verbose rdfsolve command line option --version rdfsolve command line option --void-uri-base rdfsolve-pipeline-local-mine command line option -d rdfsolve-instance-match-probe command line option rdfsolve-instance-match-seed command line option -i rdfsolve-inference-run command line option -o rdfsolve-export-csv command line option rdfsolve-export-jsonld command line option rdfsolve-export-linkml command line option rdfsolve-export-rdfconfig command line option rdfsolve-export-shacl command line option rdfsolve-export-void command line option rdfsolve-inference-run command line option rdfsolve-instance-match-probe command line option -p rdfsolve-instance-match-probe command line option rdfsolve-instance-match-seed command line option rdfsolve-semra-import command line option rdfsolve-semra-seed command line option -s rdfsolve-semra-import command line option rdfsolve-semra-seed command line option -v rdfsolve command line option

A

abort_reason (MiningReport attribute) about (Mapping attribute) (MinedSchema attribute) AboutMetadata (class in rdfsolve.schema_models.core)

add_extra() (RunMetrics method) architecture (MachineInfo attribute) ask() (SparqlHelper method) authors (AboutMetadata attribute) (MiningReport attribute)

B

benchmark (MiningReport attribute)

BenchmarkCollector (class in rdfsolve.tools.benchmark) build() (AboutMetadata static method)

C

chunk_size (SourceEntry attribute) class_batch_size (SourceEntry attribute) class_chunk_size (SourceEntry attribute) class_count (MiningReport attribute) classes_found (RunMetrics attribute) clear_collected_queries() (SparqlHelper class method) close() (SparqlHelper method) collect_machine_info() (in module rdfsolve.tools.benchmark) compose_query_from_paths() (in module rdfsolve.api) (in module rdfsolve.compose) compose_snippet() (in module rdfsolve.codegen) confidence (MappingEdge attribute)

config (MiningReport attribute) construct() (SparqlHelper method) CONSTRUCT_ACCEPT (MimeTypes attribute) construct_graph() (SparqlHelper method) COST_LIMIT_PATTERNS (SparqlHelper attribute) count (SchemaPattern attribute) counts (SourceEntry attribute) cpu_count_logical (MachineInfo attribute) cpu_count_physical (MachineInfo attribute) cpu_model (MachineInfo attribute) cpu_system_s (RunMetrics attribute) cpu_user_s (RunMetrics attribute) curie_map (SsomMapping attribute)

D

dataset (RunMetrics attribute) dataset_graph() (Mapping class method) dataset_metadata (MiningReport attribute) dataset_name (AboutMetadata attribute) (InstanceMatchResult attribute) (MiningReport attribute) datatype (ResultCell attribute) (SchemaPattern attribute)

decompress_directory() (in module rdfsolve.tools.decompress) decompress_file() (in module rdfsolve.tools.decompress) delay (SourceEntry attribute) description (QueryRecord attribute) disable_query_collection() (SparqlHelper class method) duration_ms (QueryResult attribute) duration_s (OneShotQueryResult attribute) (PhaseReport attribute)

E

edges (Mapping attribute) enable_query_collection() (SparqlHelper class method) endpoint (AboutMetadata attribute) (QueryResult attribute) (RunMetrics attribute) (SourceEntry attribute) endpoint_url (InstanceMatchResult attribute) (MiningReport attribute) (QueryRecord attribute) (SparqlHelper attribute) EndpointError EndpointTimeoutError EndpointUnhealthyError error (OneShotQueryResult attribute) (PhaseReport attribute) (QueryResult attribute) (RunMetrics attribute)

escape_sparql_for_format() (SparqlHelper static method) evidence_chain (InferencedMapping attribute) (SemraMapping attribute) execute_sparql() (in module rdfsolve.api) (in module rdfsolve.query) execute_sparql_snippet() (in module rdfsolve.codegen) expand_curie() (in module rdfsolve._uri) expand_curie_bioregistry() (in module rdfsolve._uri) export_queries_as_ttl() (SparqlHelper class method) export_query_snippet() (in module rdfsolve.codegen) extra (RunMetrics attribute)

F

failed (QueryStats attribute) filter_service_namespaces() (MinedSchema method) find_classes_for_uri_pattern() (SparqlHelper method) finished_at (AboutMetadata attribute) (MiningReport attribute) (PhaseReport attribute) (RunMetrics attribute)

from_bioregistry_resource() (InstanceMapping class method) from_dict() (MinedSchema class method) from_jsonld() (Mapping class method) (MinedSchema class method)

G

generated_at (AboutMetadata attribute) generated_by (AboutMetadata attribute) get_bindings() (SparqlHelper method) get_classes() (MinedSchema method) get_collected_queries() (SparqlHelper class method) get_properties() (MinedSchema method) get_rdfsolve_instance_mappings() (in module rdfsolve.semra_source)

graph_to_jsonld() (in module rdfsolve.api) graph_to_linkml() (in module rdfsolve.api) graph_to_schema() (in module rdfsolve.api) graph_to_shacl() (in module rdfsolve.api) graph_uris (AboutMetadata attribute) (MiningReport attribute) (SourceEntry attribute)

H

hostname (MachineInfo attribute)

HTML_MARKERS (SparqlHelper attribute)

I

import_semra_source() (in module rdfsolve.api) import_source() (in module rdfsolve.semra_converter) import_sssom_source() (in module rdfsolve.api) (in module rdfsolve.sssom_importer) infer_mappings() (in module rdfsolve.api) (in module rdfsolve.inference) inference_types (InferencedMapping attribute) InferencedMapping (class in rdfsolve.mapping_models.inference) initial_backoff (SparqlHelper attribute)

INPUT rdfsolve-export-csv command line option rdfsolve-export-jsonld command line option rdfsolve-export-linkml command line option rdfsolve-export-rdfconfig command line option rdfsolve-export-shacl command line option rdfsolve-export-void command line option InstanceMapping (class in rdfsolve.mapping_models.instance) InstanceMatchResult (class in rdfsolve.mapping_models.core) items_discovered (PhaseReport attribute)

J

JSON (MimeTypes attribute)

JSONLD (MimeTypes attribute) jsonld_to_shacl() (in module rdfsolve.shapes)

K

keywords (QueryRecord attribute)

L

lang (ResultCell attribute) license (SsomMapping attribute) linkml_uri (AboutMetadata attribute) load_mapping_jsonld() (in module rdfsolve.api)

load_parser_from_file() (in module rdfsolve.api) load_parser_from_graph() (in module rdfsolve.api) load_parser_from_jsonld() (in module rdfsolve.api) load_sources() (in module rdfsolve.sources) load_sources_dataframe() (in module rdfsolve.sources)

M

machine (MiningReport attribute) machine_info (BenchmarkCollector property) MachineInfo (class in rdfsolve.tools.benchmark) make_expander() (in module rdfsolve._uri) make_valid_linkml_name() (in module rdfsolve.schema_models.linkml) Mapping (class in rdfsolve.mapping_models.core) mapping_set_id (SsomMapping attribute) mapping_set_title (SsomMapping attribute) mapping_type (InferencedMapping attribute) (InstanceMapping attribute) (Mapping attribute) (SemraMapping attribute) (SsomMapping attribute) MappingEdge (class in rdfsolve.mapping_models.core) match_results (InstanceMapping attribute) matched_class (InstanceMatchResult attribute) max_backoff (SparqlHelper attribute) max_retries (SparqlHelper attribute) merge_instance_jsonld() (in module rdfsolve.mapping_models.instance) method (RunMetrics attribute) MimeTypes (class in rdfsolve.sparql_helper) mine() (SchemaMiner method) mine_all_sources() (in module rdfsolve.api) mine_schema() (in module rdfsolve.api) (in module rdfsolve.miner) MinedSchema (class in rdfsolve.schema_models.core) MiningReport (class in rdfsolve.schema_models.report) model_config (AboutMetadata attribute) (InferencedMapping attribute) (InstanceMapping attribute) (InstanceMatchResult attribute) (Mapping attribute) (MappingEdge attribute) (MinedSchema attribute) (MiningReport attribute) (OneShotQueryResult attribute) (PhaseReport attribute) (QueryResult attribute) (QueryStats attribute) (ResultCell attribute) (SchemaPattern attribute) (SemraMapping attribute) (SsomMapping attribute)

module rdfsolve rdfsolve._uri rdfsolve.api rdfsolve.codegen rdfsolve.compose rdfsolve.inference rdfsolve.instance_matcher rdfsolve.iri rdfsolve.mapping_models rdfsolve.mapping_models.core rdfsolve.mapping_models.inference rdfsolve.mapping_models.instance rdfsolve.mapping_models.semra rdfsolve.mapping_models.sssom rdfsolve.miner rdfsolve.parser rdfsolve.query rdfsolve.schema_models rdfsolve.schema_models.core rdfsolve.schema_models.linkml rdfsolve.schema_models.rdfconfig rdfsolve.schema_models.report rdfsolve.schema_models.shacl rdfsolve.semra_converter rdfsolve.semra_source rdfsolve.shapes rdfsolve.sources rdfsolve.sparql_helper rdfsolve.sssom_importer rdfsolve.tools rdfsolve.tools.benchmark rdfsolve.tools.decompress

N

N3 (MimeTypes attribute) name (PhaseReport attribute) (SourceEntry attribute)

notes (SourceEntry attribute) NTRIPLES (MimeTypes attribute)

O

object_class (SchemaPattern attribute) object_label (SchemaPattern attribute) one_shot_results (MiningReport attribute) OneShotQueryResult (class in rdfsolve.schema_models.report)

os_name (MachineInfo attribute) os_release (MachineInfo attribute) os_version (MachineInfo attribute) output_files (RunMetrics attribute) output_sizes_mb (RunMetrics attribute)

P

PaginationTruncatedError pattern_count (AboutMetadata attribute) (MiningReport attribute) patterns (MinedSchema attribute) peak_rss_mb (RunMetrics attribute) PhaseReport (class in rdfsolve.schema_models.report) phases (MiningReport attribute) POST_RETRY_PATTERNS (SparqlHelper attribute) predicate (MappingEdge attribute)

prepare_paginated_query() (SparqlHelper static method) probe_instance_mapping() (in module rdfsolve.api) probe_resource() (in module rdfsolve.instance_matcher) properties_found (RunMetrics attribute) property_count (MiningReport attribute) property_label (SchemaPattern attribute) property_uri (SchemaPattern attribute) python_version (MachineInfo attribute) (MiningReport attribute)

Q

qlever_version (AboutMetadata attribute) (MachineInfo attribute) (MiningReport attribute) query (QueryRecord attribute) (QueryResult attribute) query_id() (QueryRecord method)

query_stats (MiningReport attribute) query_type (OneShotQueryResult attribute) (QueryRecord attribute) QueryError QueryRecord (class in rdfsolve.sparql_helper) QueryResult (class in rdfsolve.query) QueryStats (class in rdfsolve.schema_models.report)

R

ram_total_gb (MachineInfo attribute) rdfsolve module rdfsolve command line option --verbose --version -v rdfsolve-export-csv command line option --output-dir -o INPUT rdfsolve-export-jsonld command line option --endpoint-url --graph-uri --output-dir -o INPUT rdfsolve-export-linkml command line option --output-dir --schema-description --schema-name --schema-uri -o INPUT rdfsolve-export-rdfconfig command line option --endpoint-name --endpoint-url --graph-uri --output-dir -o INPUT rdfsolve-export-shacl command line option --closed --open --output-dir --schema-description --schema-name --schema-uri --suffix -o INPUT rdfsolve-export-void command line option --output-dir -o INPUT rdfsolve-inference-run command line option --chain-cutoff --generalisation --input --name --no-inversion --no-transitivity --output -i -o rdfsolve-inference-seed command line option --chain-cutoff --generalisation --input-dir --name --no-inversion --no-transitivity --output-dir rdfsolve-instance-match-probe command line option --dataset --output --predicate --prefix --sources --timeout -d -o -p rdfsolve-instance-match-seed command line option --dataset --no-skip-existing --output-dir --predicate --prefixes --sources --timeout -d -p rdfsolve-pipeline-local-mine command line option --author --benchmark --chunk-size --class-batch-size --class-chunk-size --discover-first --endpoint --filter --format --name --no-counts --one-shot --output-dir --sources --test --timeout --untyped-as-classes --void-uri-base rdfsolve-pipeline-mine command line option --author --benchmark --chunk-size --class-batch-size --class-chunk-size --filter --format --no-counts --one-shot --output-dir --sources --timeout --untyped-as-classes

rdfsolve-pipeline-qleverfile command line option --base-port --benchmark --data-dir --filter --format --output-dir --runtime --sources --test --timeout rdfsolve-semra-import command line option --output-dir --prefix --source -p -s rdfsolve-semra-seed command line option --output-dir --prefix --sources -p -s rdfsolve._uri module rdfsolve.api module rdfsolve.codegen module rdfsolve.compose module rdfsolve.inference module rdfsolve.instance_matcher module rdfsolve.iri module rdfsolve.mapping_models module rdfsolve.mapping_models.core module rdfsolve.mapping_models.inference module rdfsolve.mapping_models.instance module rdfsolve.mapping_models.semra module rdfsolve.mapping_models.sssom module rdfsolve.miner module rdfsolve.parser module rdfsolve.query module rdfsolve.schema_models module rdfsolve.schema_models.core module rdfsolve.schema_models.linkml module rdfsolve.schema_models.rdfconfig module rdfsolve.schema_models.report module rdfsolve.schema_models.shacl module rdfsolve.semra_converter module rdfsolve.semra_source module rdfsolve.shapes module rdfsolve.sources module rdfsolve.sparql_helper module rdfsolve.sssom_importer module rdfsolve.tools module rdfsolve.tools.benchmark module rdfsolve.tools.decompress module rdfsolve_edges_to_semra() (in module rdfsolve.semra_converter) rdfsolve_version (AboutMetadata attribute) (MachineInfo attribute) (MiningReport attribute) RDFXML (MimeTypes attribute) read_bytes (RunMetrics attribute) register() (in module rdfsolve.semra_source) report_uri (AboutMetadata attribute) (MiningReport attribute) resolve_iris() (in module rdfsolve.api) (in module rdfsolve.iri) resolve_iris_snippet() (in module rdfsolve.codegen) resource_prefix (InstanceMapping attribute) ResultCell (class in rdfsolve.query) RETRY_STATUS_CODES (SparqlHelper attribute) row_count (OneShotQueryResult attribute) (QueryResult attribute) rows (QueryResult attribute) RunMetrics (class in rdfsolve.tools.benchmark)

S

schema_uri (AboutMetadata attribute) SchemaMiner (class in rdfsolve.miner) SchemaPattern (class in rdfsolve.schema_models.core) seed_inferenced_mappings() (in module rdfsolve.api) (in module rdfsolve.inference) seed_instance_mappings() (in module rdfsolve.api) seed_semra_mappings() (in module rdfsolve.api) seed_sssom_mappings() (in module rdfsolve.api) (in module rdfsolve.sssom_importer) select() (SparqlHelper method) SELECT_ACCEPT (MimeTypes attribute) select_chunked() (SparqlHelper method) semra_evidence_to_jsonld_about() (in module rdfsolve.semra_converter) semra_to_rdfsolve_edges() (in module rdfsolve.semra_converter) SemraMapping (class in rdfsolve.mapping_models.semra) sent (QueryStats attribute) source_class (MappingEdge attribute) source_dataset (MappingEdge attribute) source_endpoint (MappingEdge attribute) source_mapping_files (InferencedMapping attribute) source_name (SemraMapping attribute) (SsomMapping attribute)

source_prefix (SemraMapping attribute) SourceEntry (class in rdfsolve.sources) sparql_construct() (in module rdfsolve.sparql_helper) sparql_select() (in module rdfsolve.sparql_helper) SparqlHelper (class in rdfsolve.sparql_helper) SparqlHelperError SsomMapping (class in rdfsolve.mapping_models.sssom) sssom_file (SsomMapping attribute) started_at (AboutMetadata attribute) (MiningReport attribute) (PhaseReport attribute) (RunMetrics attribute) stats (InferencedMapping attribute) strategy (AboutMetadata attribute) (MiningReport attribute) subject_class (SchemaPattern attribute) subject_label (SchemaPattern attribute) subset_jsonld() (in module rdfsolve.shapes) success (OneShotQueryResult attribute) (QueryRecord attribute) (RunMetrics attribute)

T

target_class (MappingEdge attribute) target_dataset (MappingEdge attribute) target_endpoint (MappingEdge attribute) timeout (SourceEntry attribute) (SparqlHelper attribute) timestamp (QueryRecord attribute) to_jsonld() (InferencedMapping method) (InstanceMapping method) (Mapping method) (MinedSchema method) (SemraMapping method) (SsomMapping method) (VoidParser method) to_jsonld_from_file() (in module rdfsolve.api) to_linkml() (in module rdfsolve.schema_models.linkml) (VoidParser method) to_linkml_from_file() (in module rdfsolve.api) to_linkml_yaml() (in module rdfsolve.schema_models.linkml) (VoidParser method) to_networkx() (Mapping method) (MinedSchema method)

to_rdfconfig() (in module rdfsolve.schema_models.rdfconfig) (VoidParser method) to_rdfconfig_from_file() (in module rdfsolve.api) to_schema() (VoidParser method) to_shacl() (in module rdfsolve.schema_models.shacl) (VoidParser method) to_shacl_from_file() (in module rdfsolve.api) to_void_from_file() (in module rdfsolve.api) to_void_graph() (MinedSchema method) total_duration_s (AboutMetadata attribute) (MiningReport attribute) total_queries_failed (MiningReport attribute) total_queries_sent (MiningReport attribute) total_time_s (QueryStats attribute) track() (BenchmarkCollector method) triples_count (RunMetrics attribute) TURTLE (MimeTypes attribute) two_phase (SourceEntry attribute) type (ResultCell attribute)

U

unique_uris_labelled (MiningReport attribute) unsafe_paging (SourceEntry attribute) uri_format (InstanceMatchResult attribute)

uri_formats (InstanceMapping attribute) uri_to_curie() (in module rdfsolve._uri) use_graph (SourceEntry attribute) use_post (SparqlHelper attribute)

V

value (ResultCell attribute) variable_map (QueryResult attribute) variables (QueryResult attribute)

void_iri (SourceEntry attribute) void_uri (AboutMetadata attribute) VoidParser (class in rdfsolve.parser)

W

wall_time_s (RunMetrics attribute)

write_bytes (RunMetrics attribute) write_summary_csv() (BenchmarkCollector method)

X

XML (MimeTypes attribute)