RDFSolve 0.0.2 Documentation

RDFSolve: A library for RDF schema analysis and VoID generation.

Main modules: - api: High-level API functions (all re-exported here) - parser: VoidParser class for parsing VoID descriptions and schemas - miner: SchemaMiner class for direct SPARQL schema mining - query: SPARQL query execution with structured results - iri: IRI resolution against SPARQL endpoints - compose: SPARQL query composition from diagram paths

Table of Contents

Getting Started

• Installation
• Usage
  • Mining a schema
  • Loading an existing VoID file
  • Converting between formats
• Command Line Interface
  • rdfsolve

API Reference

• API
  • build_ontology_index()
  • compose_query_from_paths()
  • count_instances()
  • count_instances_per_class()
  • discover_void_graphs()
  • discover_void_source()
  • enrich_source_with_bioregistry()
  • execute_sparql()
  • export_schema_artifacts()
  • extract_partitions_from_void()
  • generate_qleverfiles()
  • generate_void_from_endpoint()
  • get_bioregistry_metadata()
  • graph_to_jsonld()
  • graph_to_linkml()
  • graph_to_schema()
  • graph_to_shacl()
  • import_semra_source()
  • import_sssom_source()
  • infer_mappings()
  • load_mapping_jsonld()
  • load_ontology_index()
  • load_parser_from_file()
  • load_parser_from_graph()
  • load_parser_from_jsonld()
  • load_sources()
  • mine_all_sources()
  • mine_local_source()
  • mine_schema()
  • probe_instance_mapping()
  • resolve_iris()
  • resolve_void_uri_base()
  • retrieve_void_from_graphs()
  • seed_inferenced_mappings()
  • seed_instance_mappings()
  • seed_semra_mappings()
  • seed_sssom_mappings()
  • sources_to_jsonld()
  • to_jsonld_from_file()
  • to_linkml_from_file()
  • to_rdfconfig_from_file()
  • to_shacl_from_file()
  • to_void_from_file()
• Parser
  • VoidParser
• Miner
  • SchemaMiner
  • count_instances()
  • count_instances_per_class()
  • extract_partitions_from_void()
  • generate_void_from_endpoint()
  • mine_all_sources()
  • mine_schema()
  • retrieve_void_from_graphs()
• Schema Models
  • Core
  • LinkML Converter
  • SHACL Converter
  • RDF-Config Converter
  • Report
• Mapping Models
  • Core
  • Instance Mapping
  • SSSOM Mapping
  • Inference Mapping

Format Converters

• Shapes
  • jsonld_to_shacl()
  • subset_jsonld()
• Compose
  • compose_query_from_paths()
• Code Generation
  • compose_snippet()
  • execute_sparql_snippet()
  • resolve_iris_snippet()
  • export_query_snippet()

Mappings & Integration

• SeMRA Converter
  • Key functions
  • import_source()
  • rdfsolve_edges_to_semra()
  • seed_semra_mappings()
  • semra_evidence_to_jsonld_about()
  • semra_to_rdfsolve_edges()
• SeMRA Source Registration
  • get_rdfsolve_instance_mappings()
  • register()
• SSSOM Importer
  • Typical usage
  • SSSOM TSV format
  • import_sssom_source()
  • seed_sssom_mappings()
• Instance Matcher
  • discover_mapping_prefixes()
  • probe_resource()
  • seed_instance_mappings()
• Inference
  • Main entry-point
  • infer_mappings()
  • seed_inferenced_mappings()

Internals

• SPARQL Helper
  • QueryRecord
  • SparqlHelperError
  • EndpointError
  • EndpointTimeoutError
  • EndpointUnhealthyError
  • PaginationTruncatedError
  • QueryError
  • MimeTypes
  • SparqlHelper
  • sparql_select()
  • sparql_construct()
• Query
  • ResultCell
  • QueryResult
  • execute_sparql()
• IRI Resolver
  • resolve_iris()
• URI Helpers
  • uri_to_curie()
  • make_expander()
  • expand_curie()
  • expand_curie_bioregistry()
• Sources
  • SourceEntry
  • get_bioregistry_metadata()
  • enrich_source_with_bioregistry()
  • sources_to_jsonld()
  • load_sources()
  • load_sources_dataframe()
  • classify_source_mode()
• Tools
  • Benchmark
  • Decompress

Indices and Tables

• Index

• Module Index

• Search Page